资源类型:
期刊
WOS体系:
Article
Pubmed体系:
Journal Article
收录情况:
◇ SCIE
文章类型:
论著
机构:
[1]Department of Otolaryngology, Kunming Medical University, Kunming, China.
[2]The Second Department of Otolaryngology, Head and Neck Surgery, The First Affiliated Hospital of Kunming Medical University, Kunming, China.
外科科室
耳鼻咽喉科
耳鼻喉二科(头颈外科)
昆明医科大学附属第一医院
ISSN:
0022-1767
摘要:
We analyzed bulk RNA sequencing and single-cell RNA sequencing (scRNA-seq) data to identify alternative splicing (AS) events and regulatory RNA-binding proteins (RBPs) associated with immune infiltration in human laryngeal squamous cell carcinoma (LSCC). Whole-transcriptome sequencing data of 20 human laryngeal cancer and paracancerous tissues were downloaded from the Gene Expression Omnibus public database, using newly published splicing-site usage variation analysis software to obtain highly conserved regulated AS (RAS) events, and scientific reverse convolution algorithm analysis was used to identify significantly different immune cells and perform a correlation analysis between the two. The software package edgeR was used to identify differentially expressed RBPs and the immune infiltration-related LSCC-RAS they may regulate. Finally, we present the expression profiles and survival curves of 117 human laryngeal cancer samples from The Cancer Genome Atlas dataset for the identified RBPs and LSCC-RAS. We also downloaded the gene set enrichment 150321 scRNA-seq data for two human LSCC tissue samples. The RBP expression pattern and the expression of prophase RBP genes were analyzed in different LSCC cell populations. RNA-binding motif protein 47 (RBM47) and filamin A, as well as the RBP-RAS events that were screened in both the fibulin 2 and fibronectin 1 genes, were all significantly associated with the prognosis, and the RBM47 gene was upregulated in myeloid cells. Because the prognosis was significantly associated with two RBP regulators and two LSCC-RAS events, they may be critical regulators of immune cell survival during laryngeal cancer progression, and RBM47 may regulate macrophage-associated AS and affect immunity.Copyright © 2024 by The American Association of Immunologists, Inc.
基金:
High-Level Talent Training Support Program of
Yunnan Province “Famous Doctor Special Project” (Project RLMY20200027).
WOS:
WOS:001337964000007
PubmedID:
38912837
中科院(CAS)分区:
最新[2023]版:
大类
|
3 区
医学
小类
|
3 区
免疫学
影响因子:
3.6
最新[2023版]
4.2
最新五年平均
0
出版当年[2024版]
0
出版当年五年平均
3.6
出版前一年[2023版]
第一作者:
Xu Xin
第一作者机构:
[1]Department of Otolaryngology, Kunming Medical University, Kunming, China.
通讯作者:
Wu Xiaoguang;He Xiaoguang
推荐引用方式(GB/T 7714):
Xu Xin,Yang Xi,Tang Jv,et al.Identification of Regulatory RNA-Binding Proteins Associated with Immune Infiltration in Laryngeal Squamous Cell Carcinoma[J].Journal Of Immunology (Baltimore, Md. : 1950).2024,213(3):doi:10.4049/jimmunol.2300498.
APA:
Xu Xin,Yang Xi,Tang Jv,Wu Xiaoguang&He Xiaoguang.(2024).Identification of Regulatory RNA-Binding Proteins Associated with Immune Infiltration in Laryngeal Squamous Cell Carcinoma.Journal Of Immunology (Baltimore, Md. : 1950),213,(3)
MLA:
Xu Xin,et al."Identification of Regulatory RNA-Binding Proteins Associated with Immune Infiltration in Laryngeal Squamous Cell Carcinoma".Journal Of Immunology (Baltimore, Md. : 1950) 213..3(2024)