机构:[1]Kunming Med Univ, Affiliated Hosp 1, Dept Dermatol, Kunming, Yunnan, Peoples R China昆明医科大学附属第一医院内科科室皮肤科[2]Kunming Med Univ, Yanan Affiliated Hosp, Kunming, Yunnan, Peoples R China
Chronic actinic dermatitis (CAD), a photosensitive dermatosis, is characterized by inflammatory lesions, especially on sun-exposed skin. However, its pathogenesis remains unclear. In this study, second-generation RNA sequencing and comprehensive bioinformatics analyses of mRNAs and long noncoding RNAs (IncRNAs) were performed to determine the transcriptome profiles of patients with CAD. A total 6889 annotated IncRNAs, 341 novel IncRNAs, and 65091 mRNAs were identified. Interestingly, patients with CAD and healthy controls showed distinct transcriptome profiles. Indeed, 198 annotated (81.48%) and 45 novel (18.52%) IncRNAs were differentially expressed between the two groups. GO, KEGG, and RGSEA analyses of IncRNAs showed that inflammatory and immune response related pathways played crucial roles in the pathogenetic mechanism of CAD. In addition, we unveiled key differentially expressed IncRNAs, including IncRNA RP11-356I2.4 which plays a role probably by regulating TNFAIP3 and inflammation. qRT-PCR data validated the differentially expressed genes. The newly identified IncRNAs may have potential roles in the development of CAD; these findings lay a solid foundation for subsequent functional exploration of IncRNAs and mRNAs as therapeutic targets for CAD.
基金:
Newcomer Award for Doctoral Student in Yunnan Province; PhD Innovation Fund of Kunming Medical University [2017D004]; National Natural Science Foundation of ChinaNational Natural Science Foundation of China [U1402223, 81360234]; Provincial Funds in Yunnan Province [2017HA010, 2016NS008]
语种:
外文
被引次数:
WOS:
PubmedID:
中科院(CAS)分区:
出版当年[2018]版:
大类|3 区生物
小类|3 区生物工程与应用微生物4 区医学:研究与实验
最新[2023]版:
无
JCR分区:
出版当年[2017]版:
Q2BIOTECHNOLOGY & APPLIED MICROBIOLOGYQ3MEDICINE, RESEARCH & EXPERIMENTAL
最新[2023]版:
Q3BIOTECHNOLOGY & APPLIED MICROBIOLOGYQ3MEDICINE, RESEARCH & EXPERIMENTAL
第一作者机构:[1]Kunming Med Univ, Affiliated Hosp 1, Dept Dermatol, Kunming, Yunnan, Peoples R China
通讯作者:
通讯机构:[1]Kunming Med Univ, Affiliated Hosp 1, Dept Dermatol, Kunming, Yunnan, Peoples R China
推荐引用方式(GB/T 7714):
Lei Dongyun,Lv Lechun,Yang Li,et al.Genome-Wide Analysis of mRNA and Long Noncoding RNA Profiles in Chronic Actinic Dermatitis[J].BIOMED RESEARCH INTERNATIONAL.2017,2017:doi:10.1155/2017/7479523.
APA:
Lei, Dongyun,Lv, Lechun,Yang, Li,Wu, Wenjuan,Liu, Yong...&He, Li.(2017).Genome-Wide Analysis of mRNA and Long Noncoding RNA Profiles in Chronic Actinic Dermatitis.BIOMED RESEARCH INTERNATIONAL,2017,
MLA:
Lei, Dongyun,et al."Genome-Wide Analysis of mRNA and Long Noncoding RNA Profiles in Chronic Actinic Dermatitis".BIOMED RESEARCH INTERNATIONAL 2017.(2017)