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Triple-negative breast cancer cells respond to T cells severely at the alternative splicing layer(Open Access)

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机构: [a]Department of Otolaryngology, the First People's Hospital of Yunnan Province, The Affiliated Hospital of Kunming University of Science and Technology, Kunming, Yunnan [b]State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan [c]Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, 650223, China [d]The Second Department of Otolaryngology Head and Neck Surgery, The First Affiliated Hospital of Kunming Medical University, Kunming, Yunnan [e]Department of Breast Cancer, Third Affiliated Hospital of Kunming Medical University, Kunming, 650118, China [f]Department of Oncology, Qujing First People's Hospital, Qujing, 202150, China [g]Yunnan University of Chinese Medicine, Kunming, 650500, China
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关键词: Alternative splicing Breast cancer Cross talk Immunotherapy T cells Transcriptomic dataset Translation initiation Triple-negative tRNA aminoacylation Tumor–immune cells

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Background: Cross talk of tumor–immune cells at the gene expression level has been an area of intense research. However, it is largely unknown at the alternative splicing level which has been found to play important roles in the tumor–immune microenvironment. Results: Here, we re-exploited one transcriptomic dataset to gain insight into tumor–immune interactions from the point of AS level. Our results showed that the AS profiles of triple-negative breast cancer cells co-cultured with activated T cells were significantly changed but not Estrogen receptor positive cells. We further suggested that the alteration in AS profiles in triple-negative breast cancer cells was largely caused by activated T cells rather than paracrine factors from activated T cells. Biological pathway analyses showed that translation initiation and tRNA aminoacylation pathways were most disturbed with T cell treatment. We also established an approach largely based on the AS factor–AS events associations and identified LSM7, an alternative splicing factor, may be responsible for the major altered events. Conclusions: Our study reveals the notable differences of response to T cells among breast cancer types which may facilitate the development or improvement of tumor immunotherapy. How to cite: Zhao L, Yang X, Feng C, et al. Triple-negative breast cancer cells respond to T cells severely at the alternative splicing layer. Electron J Biotechnol 2021;50.https://doi.org/10.1016/j.ejbt.2021.01.001 © 2021

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出版当年[2022]版:
大类 | 4 区 工程技术
小类 | 4 区 生物工程与应用微生物
最新[2023]版:
大类 | 4 区 生物学
小类 | 4 区 生物工程与应用微生物
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出版当年[2021]版:
Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
最新[2023]版:
Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY

影响因子: 最新[2023版] 最新五年平均 出版当年[2021版] 出版当年五年平均 出版前一年[2020版] 出版后一年[2022版]

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第一作者机构: [a]Department of Otolaryngology, the First People's Hospital of Yunnan Province, The Affiliated Hospital of Kunming University of Science and Technology, Kunming, Yunnan [b]State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan [c]Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, 650223, China
通讯作者:
通讯机构: [b]State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan [g]Yunnan University of Chinese Medicine, Kunming, 650500, China
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