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The development of non-coding RNA ontology

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机构: [1]School of Computing, University of South Alabama, Shelby Hall, Room 1123, 150 Jaguar Drive Mobile, AL 36688, USA [2]Department of Biomedical Informatics, University of Utah School of Medicine, Salt Lake City, Utah, USA [3]University at Buffalo – SUNY, Buffalo, New York 14260, USA [4]Jackson Laboratory, Bar Harbor, Connecticut 04609, USA [5]Computer and Information Science Department, University of Oregon, Eugene, Oregon 97403, USA [6]Miracle Query, Inc., Eugene, Oregon 97405, USA [7]Georgetown University Medical Center, Washington DC 20007, USA [8]University at Buffalo – SUNY, Buffalo, New York 14260, USA [9]Department of Electrical Engineering and Computer Science, University of Kansas, Lawrence, Kansas 66045, USA [10]Division of Biomedical Statistics and Informatics, College of Medicine at Mayo Clinic, Rochester, Minnesota 55905, USA [11]Data Coordination and Integration Center, University of Miami, Miami, Florida 33146, USA [12]Endocrinology Department, Kunming Medical University, Kunming, Yunnan, 650032 China [13]School of Computing, University of South Alabama, Mobile, Alabama 36688, USA [14]Computer and Information Science, University of Oregon, Eugene, Oregon 97403, USA [15]School of Computing, University of South Alabama, Mobile, Alabama 36688, USA [16]School of Computing, University of South Alabama, Mobile, Alabama 36688, USA [17]Lab Animal Medicine, Microbiology, Immunology and Bioinformatics, University of Michigan, Ann Arbor, Michigan 48109, USA [18]Department of Computer Science, University of Central Florida, Orlando, Florida 32816, USA [19]Cancer Biology, Washington University in St. Louis, St. Louis, Missouri 63130, USA [20]Mitchell Cancer Institute, University of South Alabama, Mobile, Alabama 36604, USA [21]Department of Biology, University of South Alabama, Mobile, Alabama 36688, USA [22]Mitchell Cancer Institute, University of South Alabama, Mobile, Alabama 36604, USA [23]Endocrinology Department,the First Affiliated Hospital of Kunming Medical University
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关键词: non-coding RNA bio-ontologies domain ontology reference ontology ontology development semantic data annotation

摘要:
Identification of non-coding RNAs (ncRNAs) has been significantly improved over the past decade. On the other hand, semantic annotation of ncRNA data is facing critical challenges due to the lack of a comprehensive ontology to serve as common data elements and data exchange standards in the field. We developed the Non-Coding RNA Ontology (NCRO) to handle this situation. By providing a formally defined ncRNA controlled vocabulary, the NCRO aims to fill a specific and highly needed niche in semantic annotation of large amounts of ncRNA biological and clinical data.

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出版当年[2017]版:
大类 | 4 区 生物
小类 | 4 区 数学与计算生物学
最新[2023]版:
大类 | 4 区 生物学
小类 | 4 区 数学与计算生物学
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出版当年[2016]版:
Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY
最新[2023]版:
Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY

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第一作者机构: [1]School of Computing, University of South Alabama, Shelby Hall, Room 1123, 150 Jaguar Drive Mobile, AL 36688, USA
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