机构:[1]Kunming Med Univ, Affiliated Hosp 1, Dept Crit Care Med, Kunming, Peoples R China昆明医科大学附属第一医院[2]Hangzhou Matridx Biotechnol Co, Dept Med, Hangzhou, Peoples R China
Background: Surface pathogens in the ICU pose a global public health threat, especially to elderly patients who are immunocom-promised. To detect these pathogens, unbiased methods such as metagenomic next-generation sequencing (mNGS) are increasingly utilized for environmental microbiological surveillance. Methods: In a six-month study from January to July 2022, we investigated microbial communities in Chinese geriatric ICUs by regularly monitoring multiple surfaces at three-month intervals. Using mNGS sequencing, we analyzed microorganisms present at eight specific locations within the ICU. Additionally, we compared pathogen profiles and drug resistance genes between patient cultures and environmental samples collected during the same period. Results: The microbial composition remained relatively stable over time, but significant differences in alpha diversities were observed among various surfaces such as floors, hands, pumps, trolleys, and ventilator inlets/outlets. Surfaces with high contact frequency for healthcare workers, including workstations, ventilator panels, trolleys, pumps, and beds, harbored pathogenic microorganisms such as Acinetobacter baumannii, Cutibacterium acnes, Staphylococcus haemolyticus, Pseudomonas aeruginosa, and Enterococcus faecium. Acinetobacter baumannii, particularly the carbapenem-resistant strain (CRAB), was the most frequently identified pathogen in geriatric ICU patients regardless of testing method used. The mNGS approach enabled detection of viruses, fungi, and parasites that are challenging to culture. Additionally, an abundance of drug resistance genes was found in almost all environmental samples. Conclusion: The microbial composition and abundance in the ICU remained relatively constant over time. The floor exhibited the highest microbial diversity and abundance in the ICU environment. Drug-resistant genes in the ICU environment may migrate between patients. Overall, mNGS is an emerging and powerful tool for microbiological monitoring of the hospital environment.
基金:
Clinical Research Center for Geriatric Diseases of Yunnan Province-diagnosis and treatment of geriatric comorbidity and clinical translational research [202102AA310069]; Joint Special Funds for the Department of Science and Technology of Yunnan Province-Kunming Medical University [202001AY070001-205]
第一作者机构:[1]Kunming Med Univ, Affiliated Hosp 1, Dept Crit Care Med, Kunming, Peoples R China
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推荐引用方式(GB/T 7714):
Yang Jilin,Li Lingyi,Zhu Xiaolin,et al.Microbial Community Characterization and Molecular Resistance Monitoring in Geriatric Intensive Care Units in China Using mNGS[J].INFECTION AND DRUG RESISTANCE.2023,16:5121-5134.doi:10.2147/IDR.S421702.
APA:
Yang, Jilin,Li, Lingyi,Zhu, Xiaolin,He, Chen,Li, Ting...&Wang, Yijie.(2023).Microbial Community Characterization and Molecular Resistance Monitoring in Geriatric Intensive Care Units in China Using mNGS.INFECTION AND DRUG RESISTANCE,16,
MLA:
Yang, Jilin,et al."Microbial Community Characterization and Molecular Resistance Monitoring in Geriatric Intensive Care Units in China Using mNGS".INFECTION AND DRUG RESISTANCE 16.(2023):5121-5134