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Distinguishing Four HCV Genotypes by Loop Mediated Isothermal Amplification Assay

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机构: [1]Yunnan Key Lab Lab Med, Kunming, Yunnan, Peoples R China [2]Kunming Med Univ, Dept Clin Lab, Affiliated Hosp 1, Kunming, Yunnan, Peoples R China [3]Third Peoples Hosp Kunming, Kunming, Yunnan, Peoples R China [4]Kunming Med Univ, Yunnan Key Lab Lab Med, Dept Clin Lab, Affiliated Hosp 1, 295 Xichang Rd, Kunming 650032, Yunnan, Peoples R China
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关键词: Hepatitis C virus genotype subtype loop-mediated isothermal amplification

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Background: Genotyping of hepatitis C virus (HCV) is of great significance for clinical diagnosis and treatment. The object of this work was to establish a loop-mediated isothermal amplification (LAMP) method for four subtypes of HCV prevalent in China. Methods: Gene sequences of HCV-1b, 2a, 3, and 6a were downloaded from Genebank. Primer sets of the four HCV subtypes for LAMP method were designed by Primer Explorer V.4. LAMP reactions were performed at 65 degrees C for 60 minutes. Sera of HCV-1b, 2a, 3, and 6a, HBV-A, HBV-B, HIV-1, HIV-2 and HAV, synthesized nucleic acid of HCV-4a, and 5a were used for evaluation of LAMP performance. For specificity evaluation, each primer set for HCV-1b, 2a, 3, and 6a was tested with all kinds of sera. Each serum of the above 4 HCV subtypes was diluted and aliquoted into 10 parts. RNA was subsequently extracted, which was detected by LAMP and Real-time PCR to verify limit of detection (LOD). Results: The LAMP assay established in this study could detect and distinguish HCV-1b, 2a, 3, and 6a. Consistent with gene sequencing methods, specificity of HCV-1b, 2a, 3, and 6a was 100%, 85%, 90%, and 100% detected by LAMP, respectively. The LOD of HCV-1b, 3, and 6a was 1.5 x 10(3) IU/mL. The LOD of HCV2a was 1.0 x 10(3) IU/mL with the LAMP method. Conclusions: The LAMP method established in this study is feasible for distinguishing HCV-1b, 2a, 3, and 6a specifically and sensitively.

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出版当年[2020]版:
大类 | 4 区 医学
小类 | 4 区 医学实验技术
最新[2023]版:
大类 | 4 区 医学
小类 | 4 区 医学实验技术
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出版当年[2019]版:
Q4 MEDICAL LABORATORY TECHNOLOGY
最新[2023]版:
Q4 MEDICAL LABORATORY TECHNOLOGY

影响因子: 最新[2023版] 最新五年平均 出版当年[2019版] 出版当年五年平均 出版前一年[2018版] 出版后一年[2020版]

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第一作者机构: [1]Yunnan Key Lab Lab Med, Kunming, Yunnan, Peoples R China [2]Kunming Med Univ, Dept Clin Lab, Affiliated Hosp 1, Kunming, Yunnan, Peoples R China
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通讯机构: [4]Kunming Med Univ, Yunnan Key Lab Lab Med, Dept Clin Lab, Affiliated Hosp 1, 295 Xichang Rd, Kunming 650032, Yunnan, Peoples R China
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