Background: Genotyping of hepatitis C virus (HCV) is of great significance for clinical diagnosis and treatment. The object of this work was to establish a loop-mediated isothermal amplification (LAMP) method for four subtypes of HCV prevalent in China. Methods: Gene sequences of HCV-1b, 2a, 3, and 6a were downloaded from Genebank. Primer sets of the four HCV subtypes for LAMP method were designed by Primer Explorer V.4. LAMP reactions were performed at 65 degrees C for 60 minutes. Sera of HCV-1b, 2a, 3, and 6a, HBV-A, HBV-B, HIV-1, HIV-2 and HAV, synthesized nucleic acid of HCV-4a, and 5a were used for evaluation of LAMP performance. For specificity evaluation, each primer set for HCV-1b, 2a, 3, and 6a was tested with all kinds of sera. Each serum of the above 4 HCV subtypes was diluted and aliquoted into 10 parts. RNA was subsequently extracted, which was detected by LAMP and Real-time PCR to verify limit of detection (LOD). Results: The LAMP assay established in this study could detect and distinguish HCV-1b, 2a, 3, and 6a. Consistent with gene sequencing methods, specificity of HCV-1b, 2a, 3, and 6a was 100%, 85%, 90%, and 100% detected by LAMP, respectively. The LOD of HCV-1b, 3, and 6a was 1.5 x 10(3) IU/mL. The LOD of HCV2a was 1.0 x 10(3) IU/mL with the LAMP method. Conclusions: The LAMP method established in this study is feasible for distinguishing HCV-1b, 2a, 3, and 6a specifically and sensitively.
基金:
Joint Project of Basic Research of Yunnan Science and Technology Agency [2017FE468-047]; Yunnan Provincial High-level Health Technical Personnel Training Program [H-201625]
第一作者机构:[1]Yunnan Key Lab Lab Med, Kunming, Yunnan, Peoples R China[2]Kunming Med Univ, Dept Clin Lab, Affiliated Hosp 1, Kunming, Yunnan, Peoples R China
通讯作者:
通讯机构:[4]Kunming Med Univ, Yunnan Key Lab Lab Med, Dept Clin Lab, Affiliated Hosp 1, 295 Xichang Rd, Kunming 650032, Yunnan, Peoples R China
推荐引用方式(GB/T 7714):
Yang Chuanqi,Li Xiaofei,Li Huan,et al.Distinguishing Four HCV Genotypes by Loop Mediated Isothermal Amplification Assay[J].CLINICAL LABORATORY.2019,65(11):2011-2019.doi:10.7754/Clin.Lab.2019.190142.
APA:
Yang, Chuanqi,Li, Xiaofei,Li, Huan,Guo, Chong,Li, Yixun&Liu, Zijie.(2019).Distinguishing Four HCV Genotypes by Loop Mediated Isothermal Amplification Assay.CLINICAL LABORATORY,65,(11)
MLA:
Yang, Chuanqi,et al."Distinguishing Four HCV Genotypes by Loop Mediated Isothermal Amplification Assay".CLINICAL LABORATORY 65..11(2019):2011-2019