机构:[1]Department of Medical Imaging, the First Affiliated Hospital of Kunming Medical University, No.295 Xichang Road, Kunming 650032, Yunnan, China.医技科室医学影像中心昆明医科大学附属第一医院[2]Department of Thoracic Surgery, the First Affiliated Hospital of Kunming Medical University, Kunming 650032, Yunnan, China昆明医科大学附属第一医院老年胸外科干疗科内科科室[3]Department of Pathology, Kunming Medical University, Kunming 650500, Yunnan, China.
Background: This study aimed at predicting the survival status on non-small cell lung cancer patients with the phenotypic radiomics features obtained from the CT images. Methods: A total of 186 patients' CT images were used for feature extraction via Pyradiomics. The minority group was balanced via SMOTE method. The final dataset was randomized into training set (n = 223) and validation set (n = 75) with the ratio of 3:1. Multiple random forest models were trained applying hyperparameters grid search with 10-fold cross-validation using precision or recall as evaluation standard. Then a decision threshold was searched on the selected model. The final model was evaluated through ROC curve and prediction accuracy. Results: From those segmented images of 186 patients, 1218 features were obtained via feature extraction. The preferred model was selected with recall as evaluation standard and the optimal decision threshold was set 0.56. The model had a prediction accuracy of 89.33% and the AUC score was 0.9296. Conclusion: A hyperparameters tuning random forest classifier had greater performance in predicting the survival status of non-small cell lung cancer patients, which could be taken for an automated classifier promising to stratify patients.
基金:
Yunnan Provincial Health Science and Technology Project [2009NS102, 2010NS027, 2011WS0042, 2012WS0017]; Scientific Research Projects of Research Institutes in Yunnan Medical and Health Units [2017NS037]
第一作者机构:[1]Department of Medical Imaging, the First Affiliated Hospital of Kunming Medical University, No.295 Xichang Road, Kunming 650032, Yunnan, China.
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推荐引用方式(GB/T 7714):
He Bo,Zhao Wei,Pi Jiang-Yuan,et al.A biomarker basing on radiomics for the prediction of overall survival in non-small cell lung cancer patients[J].RESPIRATORY RESEARCH.2018,19:doi:10.1186/s12931-018-0887-8.
APA:
He, Bo,Zhao, Wei,Pi, Jiang-Yuan,Han, Dan,Jiang, Yuan-Ming...&Zhao, Wei.(2018).A biomarker basing on radiomics for the prediction of overall survival in non-small cell lung cancer patients.RESPIRATORY RESEARCH,19,
MLA:
He, Bo,et al."A biomarker basing on radiomics for the prediction of overall survival in non-small cell lung cancer patients".RESPIRATORY RESEARCH 19.(2018)