高级检索
当前位置: 首页 > 详情页

Myc pathway-guided alternative splicing events predict the overall survival of lung squamous cell carcinoma

| 导出 | |

文献详情

资源类型:
WOS体系:

收录情况: ◇ SCIE

机构: [1]Kunming Med Univ, Dept Thorac Surg, Affiliated Hosp 1, 295 Xichang Rd, Kunming 650031, Yunnan, Peoples R China [2]Naval Med Univ, Changzheng Hosp, Dept Cardiothorac Surg, Shanghai, Peoples R China [3]3D Med Inc, Dept IVD Med Mkt, Shanghai, Peoples R China [4]Dali Univ, Affiliated Hosp 7, Dept Thorac Surg, Anning Peoples Hosp 1,Kunming Peoples Hosp 4, Kunming 650302, Yunnan, Peoples R China
出处:
ISSN:

关键词: Lung squamous cell carcinoma Myc signaling pathway alternative splicing prognosis

摘要:
Oncogenic signaling pathways-guided alternative splicing events and their clinical prognostic values were investigated in lung squamous cell carcinoma (LUSC). RNAseq and AS data of LUSC were obtained from TCGA and SpliceSeq database, respectively. Pathway enrichment-guided activity study of alternative splicing (PEGASAS) analysis was performed to evaluate the activity of oncogenic pathways. We identified 4229 AS events in 2311 genes significantly associated with the Hallmark_Myc_Targets_V1 pathway. Twenty-nine prognostic Myc guided-AS events classified LUSC into 3 subtypes, of which Cluster 1 subtype showed the worst prognosis, while cluster 2 subtype showed a favorable prognosis. A prognostic model based on 10 most contributive prognostic AS events identified by LASSO could effectively stratify LUSC patients into high- and low-risk groups. The high-risk group was associated with worse survival and contained more samples in poor prognostic subtype (cluster 1). GSEA revealed that cell adhesion and immune response pathways were significantly enriched in the high-risk group, and AS pathways in the low-risk group. Fifty-nine regulatory SFs were identified to regulate these 10 AS events. Myc-guided AS events could classify LUSC samples into subtypes with significantly different survival. A prognostic model based on 10 Myc-guided AS events could predict the survival of LUSC.

基金:

基金编号: 2020-04-02115 2018JS226 D-2017013 2017BS029 H-2017013 Y-Q201802-011

语种:
被引次数:
WOS:
中科院(CAS)分区:
出版当年[2023]版:
大类 | 4 区 综合性期刊
小类 | 4 区 综合性期刊
最新[2023]版:
大类 | 4 区 综合性期刊
小类 | 4 区 综合性期刊
JCR分区:
出版当年[2022]版:
Q3 MULTIDISCIPLINARY SCIENCES
最新[2023]版:
Q3 MULTIDISCIPLINARY SCIENCES

影响因子: 最新[2023版] 最新五年平均 出版当年[2022版] 出版当年五年平均 出版前一年[2021版] 出版后一年[2023版]

第一作者:
第一作者机构: [1]Kunming Med Univ, Dept Thorac Surg, Affiliated Hosp 1, 295 Xichang Rd, Kunming 650031, Yunnan, Peoples R China
共同第一作者:
通讯作者:
通讯机构: [1]Kunming Med Univ, Dept Thorac Surg, Affiliated Hosp 1, 295 Xichang Rd, Kunming 650031, Yunnan, Peoples R China [4]Dali Univ, Affiliated Hosp 7, Dept Thorac Surg, Anning Peoples Hosp 1,Kunming Peoples Hosp 4, Kunming 650302, Yunnan, Peoples R China [*1]Department of Thoracic Surgery, The First Affiliated Hospital of Kunming Medical University, No. 295 Xichang Road,Wuhua District, Kunming, Yunnan, 650031, People’s Republic of China [*2]Department of Thoracic Surgery, Anning First People’s Hospital (Kunming Fourth People’s Hospital), Seventh Affiliated Hospital of Dali University, Kunming, Yunnan, 650302, People’s Republic of China
推荐引用方式(GB/T 7714):
APA:
MLA:

资源点击量:52537 今日访问量:0 总访问量:1562 更新日期:2024-09-01 建议使用谷歌、火狐浏览器 常见问题

版权所有©2020 昆明医科大学第一附属医院 技术支持:重庆聚合科技有限公司 地址:云南省昆明市西昌路295号(650032)