Background. The molecular mechanisms involved in small-cell lung cancer (SCLC) are largely unknown. Recent studies have suggested that long non-coding RNA5 (lncRNAs) are likely to play a critical role. Objectives. There is an urgent need for suitable molecular biomarkers for SCLC diagnosis and for assessing patient prognosis. Material and methods. In this study, we used public databases to identify mRNA-like candidate lncRNAs. A multi-step computational approach was used to construct a functional SCLC lncRNAs-mediated competing with endogenous RNA (ceRNA) network (LMCN) by integrating genome-wide lncRNAs and mRNA expression profiles, miRNA-target interactions, functional analyses, and clinical survival analyses. Results. The results revealed the significance of lncRNAs interactions with ceRNAs in SCLC, indicating that integration of expression profiles and alternative splicing could be used to identify biomarkers and the underlying pathological changes. The following genes: EPB41L4A-AS1, HOXA-AS2, XIST, DLEU2, FGD5-AS1, ALMS1-IT1, SNHG12, MiR17HG, MIR4720, and SGARNA10 in cluster, as well as shared alternative splicing events, were considered to be critical genes. Conclusions. Olfactory transduction and endocytosis were the top-enriched pathways in SCLC. The selected cluster, including critical genes, might also be a potential pathway of SCLC pathogenesis. As a result, this research provides the perspective information to explore the potential critical genes and its pathways in SCLC therapy.
基金:
Scientific Research Projects of Institutions of Medical and Health Institutions in Yunnan Province The Role of NOD-like Receptors and Inflammatory Bodies in the Development of Xuanwei Lung Cancer [2016NS017]; Number of Training Objects for Leaders of Medical Disciplines in Yunnan Province [D2017013]; Doctoral Research Fund of the First Affiliated Hospital of Kunming Medical University
第一作者机构:[1]Kunming Med Univ, Affiliated Hosp 1, Kunming, Yunnan, Peoples R China
通讯作者:
通讯机构:[1]Kunming Med Univ, Affiliated Hosp 1, Kunming, Yunnan, Peoples R China
推荐引用方式(GB/T 7714):
Lei Youming,Shi Yunfei,Duan Jin,et al.Identification of alternative splicing and lncRNA genes in pathogenesis of small cell lung cancer based on their RNA sequencing[J].ADVANCES IN CLINICAL AND EXPERIMENTAL MEDICINE.2019,28(8):1043-1050.doi:10.17219/acem/94392.
APA:
Lei, Youming,Shi, Yunfei,Duan, Jin,Liu, Yinqiang,Lv, Guoli...&Zhao, Wei.(2019).Identification of alternative splicing and lncRNA genes in pathogenesis of small cell lung cancer based on their RNA sequencing.ADVANCES IN CLINICAL AND EXPERIMENTAL MEDICINE,28,(8)
MLA:
Lei, Youming,et al."Identification of alternative splicing and lncRNA genes in pathogenesis of small cell lung cancer based on their RNA sequencing".ADVANCES IN CLINICAL AND EXPERIMENTAL MEDICINE 28..8(2019):1043-1050