机构:[1]Department of Urology, The First Affiliated Hospital of Kunming Medical University, Kunming, Yunnan, China.外科科室泌尿外科昆明医科大学附属第一医院泌尿外一科泌尿外科外科科室[2]Yunnan Province Clinical Research Center for Chronic Kidney Disease, The First Affiliated Hospital of Kunming Medical University, Kunming, Yunnan, China.昆明医科大学附属第一医院
Autophagy-related genes and immune-related genes contribute significantly to the initiation and prognosis of bladder cancer (BLCA).We aimed to explore differentially expressed autophagy-related genes (DEARGs) and immune-related genes (DEIRGs) in BLCA to create a prognostic risk assessment model and gain some insights into BLCA's molecular underpinnings.The prognostic DEARGs and DEIRGs were evaluated for BLCA through The Cancer Genome Atlas (TCGA) database (n= 399) and GSE13507 dataset (n= 165). The BLCA risk model was constructed and verified. The immune score, stromal score, and estimate score in different risk groups were calculated by the ESTIMATE algorithm. Immune infiltration levels were assessed by a single sample gene set enrichment analysis (GSEA) algorithm.In the risk model, AURKA, ACTC1, MYLK, PDGFD, PDGFRA and TNC were significantly associated with the overall survival. The pathways in cancer, T cell receptor signaling pathway and B cell receptor signaling pathway were significantly gathered in the high-risk group. Moreover, the risk score was significantly correlated with infiltrating immune cells, expression of critical immune checkpoints and mismatch repair genes including MSH6, MLH1, and MSH2.In this study, three DEARGs (AURKA, ACTC1, MYLK) and three DEIRGs (PDGFD, PDGFRA, TNC) were demonstrated to be potential prognostic biomarkers for BLCA patients through bioinformatics methods, which might be novel therapeutic targets and prognostic markers for BLCA, in follow up studies, we will combine experiments to verify this.
基金:
Joint Special Funds for Applied Basic Research of
Yunnan Provincial Science and Technology Depart-
ment and Kunming Medical University (Grant No.
202001AY070001-206 and 202101AY070001-014),
and the National Natural Science Foundation of China
(Grant Nos. 81960133, 81860451, and 81802548).
第一作者机构:[1]Department of Urology, The First Affiliated Hospital of Kunming Medical University, Kunming, Yunnan, China.[2]Yunnan Province Clinical Research Center for Chronic Kidney Disease, The First Affiliated Hospital of Kunming Medical University, Kunming, Yunnan, China.
通讯作者:
通讯机构:[1]Department of Urology, The First Affiliated Hospital of Kunming Medical University, Kunming, Yunnan, China.[2]Yunnan Province Clinical Research Center for Chronic Kidney Disease, The First Affiliated Hospital of Kunming Medical University, Kunming, Yunnan, China.[*1]Department of Urology, The First Affiliated Hospital of Kunming Medical University, 295 Xichang Road, Kunming, Yunnan 650032, China
推荐引用方式(GB/T 7714):
Gao Zhenhua,Chen Cheng,Gu Peng,et al.The tumor microenvironment and prognostic role of autophagy- and immune-related genes in bladder cancer[J].CANCER BIOMARKERS.2022,35(3):293-303.doi:10.3233/CBM-220058.
APA:
Gao Zhenhua,Chen Cheng,Gu Peng,Chen Jianheng,Liu Xiaodong&Shen Jihong.(2022).The tumor microenvironment and prognostic role of autophagy- and immune-related genes in bladder cancer.CANCER BIOMARKERS,35,(3)
MLA:
Gao Zhenhua,et al."The tumor microenvironment and prognostic role of autophagy- and immune-related genes in bladder cancer".CANCER BIOMARKERS 35..3(2022):293-303